Differentially methylated CpG sites - L3 vs. L1 (Top 100)
DMCs for L3:L1
We identified 26995 DMCs for L3:L1 when the following criteria were applied and L1 was used as control.
abs(percentage methylation difference) >= 25%Q-value < 0.01
Page links
Relevant Excel files
Excel files (Downloads page) contain more information than the list presented here.
- Dataset_04_CpG_L3L1.xlsx
- Dataset_06_DMC_Region_Gonad_L3L1.xlsx
List of the DMCs between L1 and L3 diets (top 100 by Q-value)
| Chromosome | Pos | Region | Mdiff | Q-value | Gene ID | Gene symbol | Gene name |
|---|---|---|---|---|---|---|---|
| NC_027300.1 | 155927006 | Intron | 70.95 | 3.4E-265 | 106572494 | LOC106572494 | putative protein TPRXL |
| NC_027300.1 | 38863961 | Exon | 45.12 | 1.2E-180 | 106602554 | LOC106602554 | alpha-(1,6)-fucosyltransferase-like |
| NC_027303.1 | 15219927 | P1K | 66.75 | 1.3E-178 | 106602610 | LOC106602610 | neurotrophin receptor-interacting factor homolog |
| NC_027317.1 | 7880634 | Intron | 53.95 | 2.2E-159 | 106576788 | LOC106576788 | DNA nucleotidylexotransferase-like |
| NC_027312.1 | 100912810 | Flanks | -56.1 | 1.4E-156 | 106568511 | LOC106568511 | tubulin alpha-8 chain-like |
| NC_027309.1 | 66317449 | P5K | 47.05 | 6.3E-135 | 106561079 | LOC106561079 | 40S ribosomal protein S13 |
| NC_027304.1 | 50364764 | Intron | 59.67 | 2.8E-113 | 106605176 | LOC106605176 | uncharacterized protein YBL113C-like |
| NC_027310.1 | 66413922 | Flanks | 60.1 | 1.0E-110 | 106563270 | LOC106563270 | pappalysin-1-like |
| NC_027304.1 | 56846234 | Intron | 54.01 | 4.2E-104 | 106605327 | LOC106605327 | leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 |
| NC_027309.1 | 108142317 | P1K | -45.92 | 1.1E-102 | 106561665 | LOC106561665 | ankyrin repeat and SOCS box protein 13-like |
| NC_027308.1 | 77618677 | Flanks | 87.5 | 1.2E-100 | 106612103 | LOC106612103 | inositol-trisphosphate 3-kinase B-like |
| NC_027300.1 | 115441574 | Flanks | -53.19 | 3.7E-91 | 106562720 | pi4ka | phosphatidylinositol 4-kinase alpha |
| NC_027313.1 | 75625102 | Intron | 31.1 | 1.1E-88 | 106570418 | LOC106570418 | protein tyrosine phosphatase type IVA 3 |
| NC_027325.1 | 17578712 | Intron | 47.81 | 6.6E-88 | 106587217 | LOC106587217 | neuroplastin-like |
| NC_027304.1 | 36934005 | Intron | 74.66 | 2.7E-87 | 106604848 | LOC106604848 | platelet-derived growth factor receptor beta-like |
| NC_027308.1 | 77618685 | Flanks | 80.0 | 1.9E-85 | 106612103 | LOC106612103 | inositol-trisphosphate 3-kinase B-like |
| NC_027317.1 | 24227413 | Intron | 48.38 | 2.2E-84 | 106577121 | cfap36 | cilia and flagella associated protein 36 |
| NC_027310.1 | 66413881 | Flanks | 59.15 | 6.9E-83 | 106563270 | LOC106563270 | pappalysin-1-like |
| NC_027311.1 | 51534880 | P5K | -32.32 | 1.1E-81 | 106565378 | LOC106565378 | golgin subfamily A member 7-like |
| NC_027311.1 | 74229360 | Flanks | 43.27 | 3.4E-81 | 106565723 | LOC106565723 | bactericidal permeability-increasing protein-like |
| NC_027304.1 | 58774724 | Intron | -32.83 | 1.1E-78 | 106605470 | LOC106605470 | calbindin-like |
| NC_027300.1 | 115441567 | Flanks | -47.3 | 1.3E-78 | 106562720 | pi4ka | phosphatidylinositol 4-kinase alpha |
| NC_027319.1 | 25632575 | Intron | 46.98 | 5.0E-78 | 106580375 | LOC106580375 | tetratricopeptide repeat protein 28-like |
| NC_027311.1 | 10575883 | Flanks | 62.12 | 6.0E-75 | 106564399 | LOC106564399 | zinc finger protein 883-like |
| NC_027311.1 | 38257761 | P1K | -67.07 | 1.6E-74 | 106565280 | LOC106565280 | E3 ubiquitin-protein ligase Itchy-like |
| NC_027315.1 | 34254628 | P5K | -39.93 | 2.7E-74 | 106573665 | spire2 | spire type actin nucleation factor 2 |
| NC_027321.1 | 47272500 | Intron | 68.3 | 2.8E-74 | 106583608 | LOC106583608 | tensin-2-like |
| NC_027304.1 | 41058309 | Exon | -49.47 | 4.8E-73 | 106604954 | LOC106604954 | palladin-like |
| NC_027309.1 | 66317427 | P5K | 25.37 | 1.5E-72 | 106561079 | LOC106561079 | 40S ribosomal protein S13 |
| NC_027311.1 | 68410363 | P5K | -65.56 | 2.8E-71 | 106565830 | tmf1 | TATA element modulatory factor 1 |
| NC_027303.1 | 15219911 | P1K | 41.9 | 4.8E-70 | 106602610 | LOC106602610 | neurotrophin receptor-interacting factor homolog |
| NC_027319.1 | 31821491 | Intron | -35.21 | 1.0E-68 | 106580457 | LOC106580457 | autism susceptibility gene 2 protein-like |
| NC_027319.1 | 42016176 | Flanks | 73.0 | 3.1E-68 | 106580649 | LOC106580649 | 60S ribosomal protein L35a |
| NC_027315.1 | 41302501 | Intron | 52.82 | 3.5E-68 | 100380421 | Receptor-type tyrosine-protein phosphatase-like N | Receptor-type tyrosine-protein phosphatase-like N |
| NC_027300.1 | 104709757 | P5K | -44.28 | 8.0E-67 | 106560516 | exocyst complex component 6B-like | exocyst complex component 6B-like |
| NC_027319.1 | 58213766 | P1K | 41.97 | 1.4E-66 | 106581187 | LOC106581187 | transcriptional adapter 2-alpha-like |
| NC_027301.1 | 44490526 | Intron | 33.24 | 2.1E-65 | 106588327 | LOC106588327 | E3 ubiquitin-protein ligase SMURF2-like |
| NC_027321.1 | 31989927 | P1K | 53.56 | 2.4E-65 | 100195379 | dtx3l | deltex-3-like |
| NC_027319.1 | 19287279 | Intron | -65.36 | 3.1E-65 | 106579947 | LOC106579947 | translational activator GCN1-like |
| NC_027318.1 | 54326090 | Intron | 80.25 | 1.2E-64 | 106579195 | LOC106579195 | ankyrin repeat and fibronectin type-III domain-containing protein 1-like |
| NC_027312.1 | 96628422 | Intron | 72.07 | 2.0E-64 | 106568430 | LOC106568430 | putative uncharacterized protein DDB_G0286901 |
| NC_027302.1 | 39942432 | Flanks | -35.6 | 8.3E-63 | 106600477 | LOC106600477 | supervillin-like |
| NC_027303.1 | 57013294 | Intron | 60.54 | 1.9E-62 | 106603640 | LOC106603640 | neural cell adhesion molecule 1-like |
| NC_027316.1 | 12740973 | Flanks | 33.88 | 2.0E-62 | 106575311 | LOC106575311 | heparan-sulfate 6-O-sulfotransferase 3-like |
| NC_027315.1 | 34254665 | P5K | -35.41 | 3.6E-62 | 106573665 | spire2 | spire type actin nucleation factor 2 |
| NC_027319.1 | 25632590 | Intron | 43.95 | 9.7E-62 | 106580375 | LOC106580375 | tetratricopeptide repeat protein 28-like |
| NC_027304.1 | 59091178 | Flanks | 82.0 | 3.2E-61 | 100196743 | cr3l4 | cAMP-responsive element-binding protein 3-like protein 4 |
| NC_027308.1 | 105743966 | Intron | -40.34 | 3.3E-61 | 106612604 | LOC106612604 | sodium/calcium exchanger 2-like |
| NC_027307.1 | 3454809 | Flanks | -26.96 | 1.1E-59 | 106609958 | LOC106609958 | probable G-protein coupled receptor 83 |
| NC_027300.1 | 142340138 | Intron | 73.71 | 2.0E-59 | 106569324 | LOC106569324 | zinc finger FYVE domain-containing protein 16-like |
| NC_027302.1 | 22786654 | Intron | 76.69 | 5.9E-57 | 106599387 | LOC106599387 | beta-1,4-galactosyltransferase 2-like |
| NC_027312.1 | 96628390 | Exon | 66.39 | 1.2E-56 | 106568430 | LOC106568430 | putative uncharacterized protein DDB_G0286901 |
| NW_012347989.1 | 7232 | Intron | -64.84 | 2.2E-56 | 106592313 | LOC106592313 | NACHT, LRR and PYD domains-containing protein 12-like |
| NC_027328.1 | 5132367 | Intron | 47.19 | 9.5E-56 | 106590053 | LOC106590053 | cadherin-12-like |
| NC_027311.1 | 20641211 | Intron | -67.61 | 1.2E-55 | 106564665 | LOC106564665 | septin-9-like |
| NC_027311.1 | 45868438 | Intron | 70.86 | 4.5E-54 | 106565124 | LOC106565124 | low-density lipoprotein receptor class A domain-containing protein 2-like |
| NC_027315.1 | 2589058 | Flanks | -29.52 | 6.5E-54 | 106573040 | LOC106573040 | filamin-C-like |
| NC_027315.1 | 32884004 | Intron | 69.02 | 6.5E-54 | 106573702 | LOC106573702 | cadherin-13-like |
| NW_012352364.1 | 5182 | Flanks | -33.36 | 6.7E-54 | 106594295 | LOC106594295 | uncharacterized LOC106594295 |
| NC_027312.1 | 26378988 | Flanks | -26.97 | 7.2E-54 | 106566833 | properdin-like | properdin-like |
| NC_027309.1 | 89049804 | Intron | -70.29 | 1.1E-53 | 106561324 | LOC106561324 | serine/threonine-protein kinase WNK1-like |
| NC_027318.1 | 69767272 | Intron | -56.68 | 2.1E-53 | 106579565 | LOC106579565 | dipeptidyl aminopeptidase-like protein 6 |
| NC_027304.1 | 1005370 | Intron | -65.59 | 4.3E-53 | 106604099 | transcriptional regulator ATRX-like | transcriptional regulator ATRX-like |
| NC_027301.1 | 14232402 | P5K | 93.44 | 5.2E-53 | 100195786 | nca11 | Neural cell adhesion molecule 1-A |
| NC_027314.1 | 40884453 | Intron | -42.25 | 6.2E-53 | 106571690 | itpk1 | inositol-tetrakisphosphate 1-kinase |
| NC_027313.1 | 8771091 | Intron | 38.39 | 1.9E-52 | 106568720 | LOC106568720 | tyrosine-protein kinase JAK1-like |
| NC_027311.1 | 38257776 | P5K | -60.0 | 5.4E-52 | 106565280 | LOC106565280 | E3 ubiquitin-protein ligase Itchy-like |
| NC_027314.1 | 2843048 | Intron | -39.21 | 7.8E-52 | 106570851 | LOC106570851 | protein unc-13 homolog B-like |
| NC_027308.1 | 74739379 | P5K | 40.56 | 1.1E-51 | 106611966 | immt | inner membrane mitochondrial protein |
| NC_027312.1 | 40690695 | Intron | -36.32 | 1.2E-51 | 100380349 | mare1 | Microtubule-associated protein RP/EB family member 1 |
| NC_027308.1 | 4330348 | Flanks | -44.7 | 1.6E-51 | 106610614 | ero1a | endoplasmic reticulum oxidoreductase 1 alpha |
| NC_027318.1 | 46410788 | Intron | 52.62 | 5.5E-51 | 106578973 | LOC106578973 | serine-rich coiled-coil domain-containing protein 2-like |
| NC_027310.1 | 78335301 | Exon | -77.67 | 1.4E-50 | 106563588 | LOC106563588 | diamine acetyltransferase 1-like |
| NC_027319.1 | 42016205 | Flanks | 65.31 | 2.3E-50 | 106580649 | LOC106580649 | 60S ribosomal protein L35a |
| NC_027315.1 | 30312865 | Intron | 37.72 | 2.5E-50 | 106573747 | edc4 | enhancer of mRNA decapping 4 |
| NC_027319.1 | 8583876 | Intron | 57.84 | 2.5E-50 | 106580147 | kiaa0825 | KIAA0825 ortholog |
| NC_027305.1 | 47354236 | Flanks | 54.56 | 2.7E-50 | 100196700 | tagap | T-cell activation GTPase activating protein |
| NC_027316.1 | 38520204 | Flanks | -45.78 | 3.2E-50 | 106576110 | LOC106576110 | neural Wiskott-Aldrich syndrome protein-like |
| NC_027326.1 | 22455130 | Flanks | -72.99 | 4.0E-50 | 106588785 | LOC106588785 | growth factor receptor-bound protein 10-like |
| NC_027301.1 | 14232396 | P5K | 90.1 | 4.0E-50 | 100195786 | nca11 | Neural cell adhesion molecule 1-A |
| NC_027300.1 | 129405278 | P5K | -32.86 | 1.8E-49 | 106566689 | LOC106566689 | MAM domain-containing protein 2-like |
| NC_027305.1 | 11591081 | Intron | 47.09 | 1.9E-49 | 106606491 | sarcalumenin-like, transcript variant X2 | sarcalumenin-like |
| NC_027314.1 | 93456478 | Flanks | -44.31 | 2.0E-49 | 106572754 | LOC106572754 | serine--tRNA ligase, cytoplasmic-like |
| NC_027317.1 | 6231408 | Intron | 40.66 | 2.1E-49 | 106576922 | LOC106576922 | pterin-4-alpha-carbinolamine dehydratase-like |
| NC_027303.1 | 34518358 | Intron | 48.12 | 5.8E-49 | 106603037 | LOC106603037 | bromodomain-containing protein 8-like |
| NC_027319.1 | 18338285 | Intron | -25.3 | 9.5E-49 | 106579979 | LOC106579979 | serine/threonine-protein phosphatase 6 catalytic subunit-like |
| NC_027306.1 | 2141528 | Flanks | -57.81 | 1.4E-48 | 106608452 | LOC106608452 | zinc finger protein 568-like |
| NC_027308.1 | 2322400 | Intron | -47.73 | 2.8E-48 | 106610598 | LOC106610598 | ALK tyrosine kinase receptor-like |
| NC_027304.1 | 52250720 | Flanks | 40.61 | 1.0E-47 | 106605137 | LOC106605137 | gap junction alpha-9 protein-like |
| NC_027319.1 | 43618220 | Intron | 34.77 | 1.4E-47 | 106580682 | LOC106580682 | dedicator of cytokinesis protein 10-like |
| NC_027305.1 | 75626983 | Intron | 74.58 | 1.5E-47 | 106608170 | LOC106608170 | actin, alpha cardiac muscle 1-like |
| NC_027308.1 | 59178131 | Flanks | 82.64 | 3.3E-47 | 106611628 | LOC106611628 | protocadherin Fat 4-like |
| NC_027302.1 | 52393258 | Intron | -46.08 | 5.2E-47 | 106600669 | LOC106600669 | acid-sensing ion channel 2-like |
| NC_027303.1 | 33722357 | Intron | -72.44 | 5.2E-47 | 106602980 | LOC106602980 | complement factor B-like |
| NC_027317.1 | 68588360 | Exon | 59.56 | 6.4E-47 | 106578155 | neuropeptide Y receptor type 2-like | neuropeptide Y receptor type 2-like |
| NC_027324.1 | 12079191 | Flanks | -49.33 | 7.5E-47 | 100195207 | cg057 | CG057 protein |
| NC_027322.1 | 12682158 | Exon | 26.06 | 1.0E-46 | 106584076 | LOC106584076 | forkhead box protein F2-like |
| NC_027300.1 | 117578545 | Exon | 82.19 | 1.2E-46 | 106563547 | LOC106563547 | rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta-like |
| NW_012350267.1 | 5934 | Intron | -56.22 | 1.2E-46 | 106593487 | LOC106593487 | N-acylneuraminate cytidylyltransferase-like |
| NC_027319.1 | 25523079 | Intron | 26.29 | 2.0E-46 | 106580375 | LOC106580375 | tetratricopeptide repeat protein 28-like |