Differentially methylated CpG sites - L2 vs. L1 (Top 100)
DMCs for L2:L1
We identified 27433 DMCs for L2:L1 when the following criteria were applied and L1 was used as control.
abs(percentage methylation difference) >= 25%Q-value < 0.01
Page links
Relevant Excel files
Excel files (Downloads page) contain more information than the list presented here.
- Dataset_03_CpG_L2L1.xlsx
- Dataset_05_DMC_Region_Gonad_L2L1.xlsx
List of the DMCs between L1 and L2 diets (top 100 by Q-value)
| Chromosome | Pos | Region | Mdiff | Q-value | Gene ID | Gene symbol | Gene name |
|---|---|---|---|---|---|---|---|
| NC_027300.1 | 155927006 | Intron | 74.78 | 8.0E-261 | 106572494 | LOC106572494 | putative protein TPRXL |
| NC_027302.1 | 52205747 | Flanks | 56.59 | 3.9E-226 | 106600762 | LOC106600762 | ferritin, middle subunit-like |
| NC_027301.1 | 42561798 | Exon | -63.93 | 1.1E-165 | 106585752 | LOC106585752 | nucleoplasmin-like protein ANO39 |
| NC_027317.1 | 24227413 | Intron | 55.98 | 1.5E-152 | 106577121 | cfap36 | cilia and flagella associated protein 36 |
| NC_027309.1 | 66317449 | P5K | 44.89 | 9.5E-151 | 106561079 | LOC106561079 | 40S ribosomal protein S13 |
| NC_027301.1 | 44490526 | Intron | 50.14 | 9.2E-139 | 106588327 | LOC106588327 | E3 ubiquitin-protein ligase SMURF2-like |
| NC_027301.1 | 42561759 | Exon | -58.45 | 1.7E-134 | 106585752 | LOC106585752 | nucleoplasmin-like protein ANO39 |
| NC_027326.1 | 16299680 | Intron | -38.12 | 4.4E-127 | 106588589 | LOC106588589 | potassium voltage-gated channel subfamily G member 2-like |
| NC_027304.1 | 50364764 | Intron | 61.75 | 3.6E-122 | 106605176 | LOC106605176 | uncharacterized protein YBL113C-like |
| NC_027307.1 | 25046342 | Intron | -29.21 | 2.9E-107 | 106610529 | LOC106610529 | interferon-induced very large GTPase 1-like |
| NC_027304.1 | 54023884 | P5K | -92.36 | 5.5E-100 | 106605233 | LOC106605233 | sodium channel subunit beta-1-like |
| NC_027326.1 | 17185365 | Intron | -41.65 | 1.6E-96 | 106588620 | LOC106588620 | collagen alpha-1(XXII) chain-like |
| NC_027325.1 | 17578712 | Intron | 49.62 | 1.4E-93 | 106587217 | LOC106587217 | neuroplastin-like |
| NC_027307.1 | 25046367 | Intron | -25.52 | 6.3E-86 | 106610529 | LOC106610529 | interferon-induced very large GTPase 1-like |
| NC_027302.1 | 65926735 | Flanks | -49.72 | 8.3E-79 | 106601248 | LOC106601248 | protein shisa-9-like |
| NC_027314.1 | 81136556 | Intron | 80.8 | 1.2E-75 | 106572392 | LOC106572392 | calmodulin-binding transcription activator 1-like |
| NC_027300.1 | 156082329 | P250 | -47.71 | 1.2E-75 | 106572512 | LOC106572512 | glutamate receptor ionotropic, NMDA 3A-like |
| NC_027304.1 | 44804888 | P5K | 33.63 | 1.0E-74 | 106604983 | LOC106604983 | transcription initiation factor TFIID subunit 12-like |
| NC_027325.1 | 11232019 | Intron | 26.34 | 9.6E-74 | 106586987 | LOC106586987 | protocadherin Fat 2-like |
| NC_027325.1 | 21496544 | Intron | -35.08 | 3.0E-71 | 100380311 | Cysteine-rich secretory protein LCCL domain-containing 2 | Cysteine-rich secretory protein LCCL domain-containing 2 |
| NC_027300.1 | 156082327 | P250 | -50.37 | 1.2E-68 | 106572512 | LOC106572512 | glutamate receptor ionotropic, NMDA 3A-like |
| NC_027327.1 | 30991222 | Intron | -65.47 | 2.5E-68 | 106589896 | LOC106589896 | nuclear protein localization protein 4 homolog |
| NC_027308.1 | 25765775 | Intron | 57.41 | 2.3E-67 | 106610964 | LOC106610964 | protein jagged-2-like |
| NC_027301.1 | 11512913 | Flanks | 63.27 | 7.7E-67 | 106577054 | LOC106577054 | protein tweety homolog 1-like |
| NC_027324.1 | 49246481 | P5K | -31.54 | 1.1E-66 | 100380276 | tba | tubulin, alpha 8 like 3-1 |
| NC_027312.1 | 82635121 | Intron | 51.81 | 1.4E-66 | 106567763 | LOC106567763 | A-kinase anchor protein 1, mitochondrial-like |
| NC_027321.1 | 47272500 | Intron | 62.21 | 1.9E-64 | 106583608 | LOC106583608 | tensin-2-like |
| NC_027312.1 | 31957525 | Flanks | 75.26 | 4.6E-64 | 106566973 | LOC106566973 | keratin, type II cytoskeletal 8-like |
| NC_027303.1 | 10856645 | Intron | -55.63 | 1.6E-63 | 106602390 | galntl6 | polypeptide N-acetylgalactosaminyltransferase like 6 |
| NC_027317.1 | 7880634 | Intron | 38.1 | 2.2E-62 | 106576788 | LOC106576788 | DNA nucleotidylexotransferase-like |
| NC_027322.1 | 25750195 | Intron | 99.21 | 6.6E-62 | 106584311 | LOC106584311 | HAUS augmin-like complex subunit 5 |
| NC_027316.1 | 43426432 | Intron | 65.86 | 3.6E-61 | 106576228 | LOC106576228 | ankyrin repeat and SOCS box protein 13-like |
| NC_027323.1 | 13383702 | Intron | -58.09 | 8.6E-61 | 106584951 | LOC106584951 | calsenilin-like |
| NC_027320.1 | 14216921 | Intron | 57.89 | 3.1E-60 | 106581817 | acvr1 | activin A receptor type 1 |
| NC_027328.1 | 14796808 | Intron | 55.04 | 3.1E-60 | 106590196 | LOC106590196 | cadherin-7-like |
| NC_027308.1 | 77618685 | Flanks | 62.79 | 3.1E-60 | 106612103 | LOC106612103 | inositol-trisphosphate 3-kinase B-like |
| NC_027309.1 | 108142317 | P1K | -33.43 | 2.5E-59 | 106561665 | LOC106561665 | ankyrin repeat and SOCS box protein 13-like |
| NC_027307.1 | 9544929 | Intron | 38.63 | 4.7E-59 | 106610067 | LOC106610067 | uncharacterized LOC106610067 |
| NC_027305.1 | 48759336 | Intron | 50.44 | 5.4E-59 | 106607641 | LOC106607641 | C-1-tetrahydrofolate synthase, cytoplasmic-like |
| NC_027316.1 | 3513526 | Intron | 48.85 | 1.1E-58 | 106575119 | LOC106575119 | sodium- and chloride-dependent GABA transporter 2-like |
| NC_027300.1 | 156082290 | P250 | -38.6 | 1.7E-58 | 106572512 | LOC106572512 | glutamate receptor ionotropic, NMDA 3A-like |
| NC_027300.1 | 156082303 | P250 | -40.82 | 5.7E-58 | 106572512 | LOC106572512 | glutamate receptor ionotropic, NMDA 3A-like |
| NC_027314.1 | 71179171 | Intron | 65.12 | 6.0E-58 | 106572121 | LOC106572121 | neurotensin receptor type 1-like |
| NC_027300.1 | 73542663 | Exon | 52.48 | 3.2E-57 | 106609157 | LOC106609157 | choline O-acetyltransferase-like |
| NC_027304.1 | 36934005 | Intron | 63.38 | 1.6E-56 | 106604848 | LOC106604848 | platelet-derived growth factor receptor beta-like |
| NC_027321.1 | 25825544 | Exon | 54.17 | 1.7E-56 | 106583123 | LOC106583123 | protein Wnt-4a-like |
| NC_027317.1 | 1295950 | Intron | 75.36 | 2.2E-56 | 106576894 | cdh23 | cadherin related 23 |
| NC_027300.1 | 156082323 | P250 | -41.45 | 4.8E-55 | 106572512 | LOC106572512 | glutamate receptor ionotropic, NMDA 3A-like |
| NC_027300.1 | 115441574 | Flanks | -40.15 | 1.1E-54 | 106562720 | pi4ka | phosphatidylinositol 4-kinase alpha |
| NC_027312.1 | 46290454 | Intron | 46.81 | 1.4E-54 | 106567384 | LOC106567384 | beta-citrylglutamate synthase B-like |
| NC_027308.1 | 4330348 | Flanks | -41.62 | 3.8E-54 | 106610614 | ero1a | endoplasmic reticulum oxidoreductase 1 alpha |
| NC_027312.1 | 96628422 | Intron | 69.92 | 4.9E-54 | 106568430 | LOC106568430 | putative uncharacterized protein DDB_G0286901 |
| NC_027309.1 | 13651673 | Intron | -41.95 | 6.3E-54 | 106613594 | LOC106613594 | lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial-like |
| NC_027313.1 | 19698117 | Intron | -99.07 | 7.0E-54 | 106568823 | LOC106568823 | vasoactive intestinal polypeptide receptor 2-like |
| NC_027300.1 | 38863961 | Exon | 29.17 | 1.9E-53 | 106602554 | LOC106602554 | alpha-(1,6)-fucosyltransferase-like |
| NC_027306.1 | 40910890 | Exon | 50.22 | 4.7E-53 | 106609345 | LOC106609345 | carbohydrate sulfotransferase 11-like |
| NC_027312.1 | 31755193 | Intron | -81.82 | 5.3E-53 | 106566966 | renbp | renin binding protein |
| NC_027301.1 | 11512962 | Flanks | 59.65 | 9.4E-53 | 106577054 | LOC106577054 | protein tweety homolog 1-like |
| NC_027314.1 | 11960501 | Intron | 88.7 | 6.6E-52 | 106571000 | LOC106571000 | T-box transcription factor TBX18-like |
| NC_027318.1 | 60683829 | P5K | 49.01 | 1.9E-51 | 106579062 | LOC106579062 | tectonic-3-like |
| NC_027304.1 | 30164022 | Flanks | 90.26 | 3.2E-51 | 106604657 | LOC106604657 | smoothelin-like protein 1 |
| NC_027304.1 | 30164014 | Flanks | 90.26 | 7.2E-51 | 106604657 | LOC106604657 | smoothelin-like protein 1 |
| NC_027304.1 | 20875823 | Intron | -74.43 | 7.7E-51 | 106604454 | LOC106604454 | glycine receptor subunit alpha-4-like |
| NC_027309.1 | 110106440 | Intron | -79.36 | 7.9E-51 | 106561726 | tetraspanin-18-like | tetraspanin-18-like |
| NC_027309.1 | 106089660 | Exon | 59.82 | 8.1E-51 | 106561637 | LOC106561637 | fibroblast growth factor 3-like |
| NC_027308.1 | 77618677 | Flanks | 55.43 | 8.1E-51 | 106612103 | LOC106612103 | inositol-trisphosphate 3-kinase B-like |
| NC_027318.1 | 33307698 | Exon | -75.53 | 9.1E-51 | 106578746 | gpr137b | G protein-coupled receptor 137B |
| NC_027309.1 | 12944130 | Intron | 32.38 | 1.1E-49 | 106613575 | LOC106613575 | ephrin-A2-like |
| NC_027313.1 | 13817801 | Intron | 78.92 | 1.2E-49 | 106568935 | LOC106568935 | calsyntenin-2-like |
| NW_012347142.1 | 29019 | Exon | 66.31 | 1.3E-49 | 106591755 | LOC106591755 | nuclear pore complex protein Nup50-like |
| NC_027309.1 | 109855815 | Flanks | -35.28 | 1.7E-49 | 106561717 | LOC106561717 | tyrosine-protein kinase CSK-like |
| NC_027300.1 | 115441567 | Flanks | -36.8 | 1.7E-49 | 106562720 | pi4ka | phosphatidylinositol 4-kinase alpha |
| NC_027315.1 | 2352493 | Exon | 46.56 | 2.8E-49 | 106573038 | LOC106573038 | cAMP-dependent protein kinase type II-beta regulatory subunit-like |
| NC_027317.1 | 22131304 | P5K | 28.75 | 7.4E-49 | 106577148 | LOC106577148 | monocarboxylate transporter 9-like |
| NC_027318.1 | 30265469 | Intron | -32.02 | 7.6E-49 | 106578687 | LOC106578687 | titin-like |
| NC_027319.1 | 25632575 | Intron | 38.97 | 1.5E-48 | 106580375 | LOC106580375 | tetratricopeptide repeat protein 28-like |
| NC_027313.1 | 5716547 | Intron | 50.77 | 2.1E-48 | 106568679 | LOC106568679 | cadherin-7-like |
| NC_027301.1 | 46122665 | Intron | -31.11 | 2.6E-48 | 106587895 | LOC106587895 | protein AF-17-like |
| NC_027309.1 | 38497357 | Flanks | -42.1 | 3.1E-48 | 106560396 | LOC106560396 | tensin-3-like |
| NC_027319.1 | 60811463 | Intron | -40.53 | 3.2E-48 | 106581139 | LOC106581139 | 52 kDa repressor of the inhibitor of the protein kinase-like |
| NC_027312.1 | 94842373 | Exon | 87.63 | 1.2E-47 | 106568419 | LOC106568419 | cryptic protein-like |
| NC_027312.1 | 94842395 | Exon | 87.63 | 1.2E-47 | 106568419 | LOC106568419 | cryptic protein-like |
| NC_027300.1 | 3511231 | Flanks | -85.27 | 2.6E-47 | 106600624 | ttc9 | tetratricopeptide repeat domain 9 |
| NC_027312.1 | 19910000 | Intron | 67.73 | 2.8E-47 | 106566735 | cdh4 | cadherin 4 |
| NC_027305.1 | 55396052 | Flanks | 64.81 | 3.2E-47 | 106607752 | moxd1 | monooxygenase DBH like 1 |
| NC_027316.1 | 40012158 | Intron | 100.0 | 3.7E-47 | 106576154 | LOC106576154 | signal peptide, CUB and EGF-like domain-containing protein 1 |
| NC_027310.1 | 16264871 | Intron | -44.89 | 3.7E-47 | 106562146 | LOC106562146 | immunoglobulin superfamily DCC subclass member 3-like |
| NC_027311.1 | 8480128 | Exon | 82.47 | 4.9E-47 | 106564320 | LOC106564320 | uncharacterized LOC106564320 |
| NC_027316.1 | 45624900 | Intron | 88.93 | 7.1E-47 | 106576317 | LOC106576317 | synaptotagmin-1-like |
| NC_027315.1 | 29951013 | Intron | -40.67 | 7.8E-47 | 106573752 | hydin | HYDIN axonemal central pair apparatus protein |
| NC_027313.1 | 16809282 | Flanks | -64.57 | 1.1E-46 | 106569007 | LOC106569007 | G-protein coupled receptor 55-like |
| NC_027308.1 | 53423213 | Intron | 63.49 | 1.3E-46 | 106611552 | LOC106611552 | LIM domain-binding protein 2 |
| NC_027312.1 | 87520737 | Intron | 55.29 | 1.4E-46 | 106568192 | LOC106568192 | serine/arginine-rich splicing factor 9-like |
| NC_027315.1 | 55286936 | Intron | 44.67 | 1.4E-46 | 106574184 | armc9 | armadillo repeat containing 9 |
| NC_027320.1 | 14216916 | Intron | 50.47 | 1.5E-46 | 106581817 | acvr1 | activin A receptor type 1 |
| NC_027300.1 | 148324102 | Intron | 67.86 | 1.8E-46 | 106571245 | LOC106571245 | rab-like protein 6 |
| NC_027300.1 | 131658029 | Intron | -33.06 | 2.7E-46 | 106566295 | LOC106566295 | breakpoint cluster region protein-like |
| NC_027311.1 | 47732991 | Flanks | 67.49 | 5.5E-46 | 106565092 | zc3h11a | zinc finger CCCH-type containing 11A |
| NC_027302.1 | 27246348 | Intron | 63.64 | 5.6E-46 | 106599664 | LOC106599664 | laminin subunit alpha-3-like |
| NC_027313.1 | 24532567 | Intron | -100.0 | 6.0E-46 | 106569241 | LOC106569241 | disks large-associated protein 1-like |